Package: sMSROC 0.1.3

sMSROC: Assessment of Diagnostic and Prognostic Markers

Provides estimations of the Receiver Operating Characteristic (ROC) curve and the Area Under the Curve (AUC) based on the two-stages mixed-subjects ROC curve estimator (Diaz-Coto et al. (2020) <doi:10.1515/ijb-2019-0097> and Diaz-Coto et al. (2020) <doi:10.1080/00949655.2020.1736071>).

Authors:Susana Diaz-Coto [aut], Susana Diaz-Coto [cre]

sMSROC_0.1.3.tar.gz
sMSROC_0.1.3.zip(r-4.7-any)sMSROC_0.1.3.zip(r-4.6-any)sMSROC_0.1.3.zip(r-4.5-any)
sMSROC_0.1.3.tgz(r-4.6-any)sMSROC_0.1.3.tgz(r-4.5-any)
sMSROC_0.1.3.tar.gz(r-4.7-any)sMSROC_0.1.3.tar.gz(r-4.6-any)
sMSROC_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
sMSROC/json (API)

# Install 'sMSROC' in R:
install.packages('sMSROC', repos = c('https://susanadc2009.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 5 scripts 284 downloads 31 exports 115 dependencies

Last updated from:93d5bda405. Checks:1 ERROR, 8 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develERROR155
source / vignettesOK400
linux-releaseOK209
macos-releaseOK217
macos-oldrelOK173
windows-develOK132
windows-releaseOK189
windows-oldrelOK96
wasm-releaseOK160

Exports:auc_ci_bootauc_ci_emprauc_ci_nvarcheck_ci_clcheck_conf_intcheck_gridcheck_marker_binoutcheck_marker_timeiccheck_marker_timerccheck_methcheck_nbootscheck_ncpuscheck_timcheck_type_outcomecompute_ROCconf_int_printevol_aucexplore_plotexplore_tablepred_model_binoutpred_model_emppred_model_timeicpred_model_timercprint.sMSROCprobs_predsMS_binoutsMS_timeicsMS_timercsMSROCsMSROC_plotvariance_probs

Dependencies:askpassbackportsbase64encbslibcachemcheckmatecliclustercodacodetoolscolorspacecommonmarkcpp11data.tabledigestdplyrevaluatefarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforeachforeignFormulafsgdtoolsgenericsggplot2gluegridExtragridSVGgtablehighrHmischtmlTablehtmltoolshtmlwidgetshttpuvicenRegisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixMatrixModelsmemoisemimeMLEcensmultcompmvtnormnlmennetofficeropensslotelpillarpkgconfigplotROCplyrpolsplinepromisespurrrquantregR6raggrappdirsRColorBrewerRcppRcppEigenrlangrmarkdownrmsrpartrstudioapiS7sandwichsassscalesshinysourcetoolsSparseMstringistringrsurvivalsyssystemfontstextshapingTH.datathregItibbletidyrtidyselecttinytexutf8uuidvctrsviridisLitewithrxfunXMLxml2xtableyamlzipzoo

Readme and manuals

Help Manual

Help pageTopics
Confidence intervals for the AUC (bootstrap)auc_ci_boot
Confidence intervals for the AUC (empirical variance estimation)auc_ci_empr
Confidence intervals for the AUC (theoretical variance estimation)auc_ci_nvar
Check confidence level for AUC's confidence intervalscheck_ci_cl
Checks for parameters to compute the confidence intervals for the AUCcheck_conf_int
Check gridcheck_grid
Check of prognosis scenarios under interval censorshipcheck_marker_timeic
Checks of diagnosis scenarioscheck_marker_binout
Check of prognosis scenarios under right censorshipcheck_marker_timerc
Check the method for estimating the predictive modelcheck_meth
Check number of bootstrap samplescheck_nboots
Check number of CPUscheck_ncpus
Check timcheck_tim
Check the type of scenario (diagnosis/prognosis)check_type_outcome
Weighted empirical ROC curve estimatorcompute_ROC
AUC and confidence intervalsconf_int_print
Diabetes datasetdiabet
Evolution of the AUCsevol_auc
Graphical exploratory data analysisexplore_plot
Exploratory data analysisexplore_table
Fibrosis datasetfibrosis
KTFS datasetktfs
Predictive model estimation in diagnosis scenariospred_model_binout
Predictive model (naive estimation)pred_model_emp
Predictive model in prognosis scenarios (I)pred_model_timeic
Predictive model in prognosis scenarios (II)pred_model_timerc
Print sMSROCprint.sMSROC
Plot of the predictive modelprobs_pred
sMS estimator for diagnostic biomarkerssMS_binout
sMS estimator for prognostic biomarkers and interval censoringsMS_timeic
sMS estimator for prognostic biomarkers and right censorshipsMS_timerc
sMS ROC curve estimator computationsMSROC
Plot of the sMS ROC curve estimatesMSROC_plot
Variance of the predictive modelvariance_probs